""" Streamline plotting for 2D vector fields. """ import numpy as np import matplotlib as mpl from matplotlib import _api, cm, patches import matplotlib.colors as mcolors import matplotlib.collections as mcollections import matplotlib.lines as mlines __all__ = ['streamplot'] def streamplot(axes, x, y, u, v, density=1, linewidth=None, color=None, cmap=None, norm=None, arrowsize=1, arrowstyle='-|>', minlength=0.1, transform=None, zorder=None, start_points=None, maxlength=4.0, integration_direction='both', broken_streamlines=True): """ Draw streamlines of a vector flow. Parameters ---------- x, y : 1D/2D arrays Evenly spaced strictly increasing arrays to make a grid. If 2D, all rows of *x* must be equal and all columns of *y* must be equal; i.e., they must be as if generated by ``np.meshgrid(x_1d, y_1d)``. u, v : 2D arrays *x* and *y*-velocities. The number of rows and columns must match the length of *y* and *x*, respectively. density : float or (float, float) Controls the closeness of streamlines. When ``density = 1``, the domain is divided into a 30x30 grid. *density* linearly scales this grid. Each cell in the grid can have, at most, one traversing streamline. For different densities in each direction, use a tuple (density_x, density_y). linewidth : float or 2D array The width of the streamlines. With a 2D array the line width can be varied across the grid. The array must have the same shape as *u* and *v*. color : color or 2D array The streamline color. If given an array, its values are converted to colors using *cmap* and *norm*. The array must have the same shape as *u* and *v*. cmap, norm Data normalization and colormapping parameters for *color*; only used if *color* is an array of floats. See `~.Axes.imshow` for a detailed description. arrowsize : float Scaling factor for the arrow size. arrowstyle : str Arrow style specification. See `~matplotlib.patches.FancyArrowPatch`. minlength : float Minimum length of streamline in axes coordinates. start_points : (N, 2) array Coordinates of starting points for the streamlines in data coordinates (the same coordinates as the *x* and *y* arrays). zorder : float The zorder of the streamlines and arrows. Artists with lower zorder values are drawn first. maxlength : float Maximum length of streamline in axes coordinates. integration_direction : {'forward', 'backward', 'both'}, default: 'both' Integrate the streamline in forward, backward or both directions. data : indexable object, optional DATA_PARAMETER_PLACEHOLDER broken_streamlines : boolean, default: True If False, forces streamlines to continue until they leave the plot domain. If True, they may be terminated if they come too close to another streamline. Returns ------- StreamplotSet Container object with attributes - ``lines``: `.LineCollection` of streamlines - ``arrows``: `.PatchCollection` containing `.FancyArrowPatch` objects representing the arrows half-way along streamlines. This container will probably change in the future to allow changes to the colormap, alpha, etc. for both lines and arrows, but these changes should be backward compatible. """ grid = Grid(x, y) mask = StreamMask(density) dmap = DomainMap(grid, mask) if zorder is None: zorder = mlines.Line2D.zorder # default to data coordinates if transform is None: transform = axes.transData if color is None: color = axes._get_lines.get_next_color() if linewidth is None: linewidth = mpl.rcParams['lines.linewidth'] line_kw = {} arrow_kw = dict(arrowstyle=arrowstyle, mutation_scale=10 * arrowsize) _api.check_in_list(['both', 'forward', 'backward'], integration_direction=integration_direction) if integration_direction == 'both': maxlength /= 2. use_multicolor_lines = isinstance(color, np.ndarray) if use_multicolor_lines: if color.shape != grid.shape: raise ValueError("If 'color' is given, it must match the shape of " "the (x, y) grid") line_colors = [[]] # Empty entry allows concatenation of zero arrays. color = np.ma.masked_invalid(color) else: line_kw['color'] = color arrow_kw['color'] = color if isinstance(linewidth, np.ndarray): if linewidth.shape != grid.shape: raise ValueError("If 'linewidth' is given, it must match the " "shape of the (x, y) grid") line_kw['linewidth'] = [] else: line_kw['linewidth'] = linewidth arrow_kw['linewidth'] = linewidth line_kw['zorder'] = zorder arrow_kw['zorder'] = zorder # Sanity checks. if u.shape != grid.shape or v.shape != grid.shape: raise ValueError("'u' and 'v' must match the shape of the (x, y) grid") u = np.ma.masked_invalid(u) v = np.ma.masked_invalid(v) integrate = _get_integrator(u, v, dmap, minlength, maxlength, integration_direction) trajectories = [] if start_points is None: for xm, ym in _gen_starting_points(mask.shape): if mask[ym, xm] == 0: xg, yg = dmap.mask2grid(xm, ym) t = integrate(xg, yg, broken_streamlines) if t is not None: trajectories.append(t) else: sp2 = np.asanyarray(start_points, dtype=float).copy() # Check if start_points are outside the data boundaries for xs, ys in sp2: if not (grid.x_origin <= xs <= grid.x_origin + grid.width and grid.y_origin <= ys <= grid.y_origin + grid.height): raise ValueError(f"Starting point ({xs}, {ys}) outside of " "data boundaries") # Convert start_points from data to array coords # Shift the seed points from the bottom left of the data so that # data2grid works properly. sp2[:, 0] -= grid.x_origin sp2[:, 1] -= grid.y_origin for xs, ys in sp2: xg, yg = dmap.data2grid(xs, ys) # Floating point issues can cause xg, yg to be slightly out of # bounds for xs, ys on the upper boundaries. Because we have # already checked that the starting points are within the original # grid, clip the xg, yg to the grid to work around this issue xg = np.clip(xg, 0, grid.nx - 1) yg = np.clip(yg, 0, grid.ny - 1) t = integrate(xg, yg, broken_streamlines) if t is not None: trajectories.append(t) if use_multicolor_lines: if norm is None: norm = mcolors.Normalize(color.min(), color.max()) cmap = cm._ensure_cmap(cmap) streamlines = [] arrows = [] for t in trajectories: tgx, tgy = t.T # Rescale from grid-coordinates to data-coordinates. tx, ty = dmap.grid2data(tgx, tgy) tx += grid.x_origin ty += grid.y_origin # Create multiple tiny segments if varying width or color is given if isinstance(linewidth, np.ndarray) or use_multicolor_lines: points = np.transpose([tx, ty]).reshape(-1, 1, 2) streamlines.extend(np.hstack([points[:-1], points[1:]])) else: points = np.transpose([tx, ty]) streamlines.append(points) # Add arrows halfway along each trajectory. s = np.cumsum(np.hypot(np.diff(tx), np.diff(ty))) n = np.searchsorted(s, s[-1] / 2.) arrow_tail = (tx[n], ty[n]) arrow_head = (np.mean(tx[n:n + 2]), np.mean(ty[n:n + 2])) if isinstance(linewidth, np.ndarray): line_widths = interpgrid(linewidth, tgx, tgy)[:-1] line_kw['linewidth'].extend(line_widths) arrow_kw['linewidth'] = line_widths[n] if use_multicolor_lines: color_values = interpgrid(color, tgx, tgy)[:-1] line_colors.append(color_values) arrow_kw['color'] = cmap(norm(color_values[n])) p = patches.FancyArrowPatch( arrow_tail, arrow_head, transform=transform, **arrow_kw) arrows.append(p) lc = mcollections.LineCollection( streamlines, transform=transform, **line_kw) lc.sticky_edges.x[:] = [grid.x_origin, grid.x_origin + grid.width] lc.sticky_edges.y[:] = [grid.y_origin, grid.y_origin + grid.height] if use_multicolor_lines: lc.set_array(np.ma.hstack(line_colors)) lc.set_cmap(cmap) lc.set_norm(norm) axes.add_collection(lc) ac = mcollections.PatchCollection(arrows) # Adding the collection itself is broken; see #2341. for p in arrows: axes.add_patch(p) axes.autoscale_view() stream_container = StreamplotSet(lc, ac) return stream_container class StreamplotSet: def __init__(self, lines, arrows): self.lines = lines self.arrows = arrows # Coordinate definitions # ======================== class DomainMap: """ Map representing different coordinate systems. Coordinate definitions: * axes-coordinates goes from 0 to 1 in the domain. * data-coordinates are specified by the input x-y coordinates. * grid-coordinates goes from 0 to N and 0 to M for an N x M grid, where N and M match the shape of the input data. * mask-coordinates goes from 0 to N and 0 to M for an N x M mask, where N and M are user-specified to control the density of streamlines. This class also has methods for adding trajectories to the StreamMask. Before adding a trajectory, run `start_trajectory` to keep track of regions crossed by a given trajectory. Later, if you decide the trajectory is bad (e.g., if the trajectory is very short) just call `undo_trajectory`. """ def __init__(self, grid, mask): self.grid = grid self.mask = mask # Constants for conversion between grid- and mask-coordinates self.x_grid2mask = (mask.nx - 1) / (grid.nx - 1) self.y_grid2mask = (mask.ny - 1) / (grid.ny - 1) self.x_mask2grid = 1. / self.x_grid2mask self.y_mask2grid = 1. / self.y_grid2mask self.x_data2grid = 1. / grid.dx self.y_data2grid = 1. / grid.dy def grid2mask(self, xi, yi): """Return nearest space in mask-coords from given grid-coords.""" return round(xi * self.x_grid2mask), round(yi * self.y_grid2mask) def mask2grid(self, xm, ym): return xm * self.x_mask2grid, ym * self.y_mask2grid def data2grid(self, xd, yd): return xd * self.x_data2grid, yd * self.y_data2grid def grid2data(self, xg, yg): return xg / self.x_data2grid, yg / self.y_data2grid def start_trajectory(self, xg, yg, broken_streamlines=True): xm, ym = self.grid2mask(xg, yg) self.mask._start_trajectory(xm, ym, broken_streamlines) def reset_start_point(self, xg, yg): xm, ym = self.grid2mask(xg, yg) self.mask._current_xy = (xm, ym) def update_trajectory(self, xg, yg, broken_streamlines=True): if not self.grid.within_grid(xg, yg): raise InvalidIndexError xm, ym = self.grid2mask(xg, yg) self.mask._update_trajectory(xm, ym, broken_streamlines) def undo_trajectory(self): self.mask._undo_trajectory() class Grid: """Grid of data.""" def __init__(self, x, y): if np.ndim(x) == 1: pass elif np.ndim(x) == 2: x_row = x[0] if not np.allclose(x_row, x): raise ValueError("The rows of 'x' must be equal") x = x_row else: raise ValueError("'x' can have at maximum 2 dimensions") if np.ndim(y) == 1: pass elif np.ndim(y) == 2: yt = np.transpose(y) # Also works for nested lists. y_col = yt[0] if not np.allclose(y_col, yt): raise ValueError("The columns of 'y' must be equal") y = y_col else: raise ValueError("'y' can have at maximum 2 dimensions") if not (np.diff(x) > 0).all(): raise ValueError("'x' must be strictly increasing") if not (np.diff(y) > 0).all(): raise ValueError("'y' must be strictly increasing") self.nx = len(x) self.ny = len(y) self.dx = x[1] - x[0] self.dy = y[1] - y[0] self.x_origin = x[0] self.y_origin = y[0] self.width = x[-1] - x[0] self.height = y[-1] - y[0] if not np.allclose(np.diff(x), self.width / (self.nx - 1)): raise ValueError("'x' values must be equally spaced") if not np.allclose(np.diff(y), self.height / (self.ny - 1)): raise ValueError("'y' values must be equally spaced") @property def shape(self): return self.ny, self.nx def within_grid(self, xi, yi): """Return whether (*xi*, *yi*) is a valid index of the grid.""" # Note that xi/yi can be floats; so, for example, we can't simply check # `xi < self.nx` since *xi* can be `self.nx - 1 < xi < self.nx` return 0 <= xi <= self.nx - 1 and 0 <= yi <= self.ny - 1 class StreamMask: """ Mask to keep track of discrete regions crossed by streamlines. The resolution of this grid determines the approximate spacing between trajectories. Streamlines are only allowed to pass through zeroed cells: When a streamline enters a cell, that cell is set to 1, and no new streamlines are allowed to enter. """ def __init__(self, density): try: self.nx, self.ny = (30 * np.broadcast_to(density, 2)).astype(int) except ValueError as err: raise ValueError("'density' must be a scalar or be of length " "2") from err if self.nx < 0 or self.ny < 0: raise ValueError("'density' must be positive") self._mask = np.zeros((self.ny, self.nx)) self.shape = self._mask.shape self._current_xy = None def __getitem__(self, args): return self._mask[args] def _start_trajectory(self, xm, ym, broken_streamlines=True): """Start recording streamline trajectory""" self._traj = [] self._update_trajectory(xm, ym, broken_streamlines) def _undo_trajectory(self): """Remove current trajectory from mask""" for t in self._traj: self._mask[t] = 0 def _update_trajectory(self, xm, ym, broken_streamlines=True): """ Update current trajectory position in mask. If the new position has already been filled, raise `InvalidIndexError`. """ if self._current_xy != (xm, ym): if self[ym, xm] == 0: self._traj.append((ym, xm)) self._mask[ym, xm] = 1 self._current_xy = (xm, ym) else: if broken_streamlines: raise InvalidIndexError else: pass class InvalidIndexError(Exception): pass class TerminateTrajectory(Exception): pass # Integrator definitions # ======================= def _get_integrator(u, v, dmap, minlength, maxlength, integration_direction): # rescale velocity onto grid-coordinates for integrations. u, v = dmap.data2grid(u, v) # speed (path length) will be in axes-coordinates u_ax = u / (dmap.grid.nx - 1) v_ax = v / (dmap.grid.ny - 1) speed = np.ma.sqrt(u_ax ** 2 + v_ax ** 2) def forward_time(xi, yi): if not dmap.grid.within_grid(xi, yi): raise OutOfBounds ds_dt = interpgrid(speed, xi, yi) if ds_dt == 0: raise TerminateTrajectory() dt_ds = 1. / ds_dt ui = interpgrid(u, xi, yi) vi = interpgrid(v, xi, yi) return ui * dt_ds, vi * dt_ds def backward_time(xi, yi): dxi, dyi = forward_time(xi, yi) return -dxi, -dyi def integrate(x0, y0, broken_streamlines=True): """ Return x, y grid-coordinates of trajectory based on starting point. Integrate both forward and backward in time from starting point in grid coordinates. Integration is terminated when a trajectory reaches a domain boundary or when it crosses into an already occupied cell in the StreamMask. The resulting trajectory is None if it is shorter than `minlength`. """ stotal, xy_traj = 0., [] try: dmap.start_trajectory(x0, y0, broken_streamlines) except InvalidIndexError: return None if integration_direction in ['both', 'backward']: s, xyt = _integrate_rk12(x0, y0, dmap, backward_time, maxlength, broken_streamlines) stotal += s xy_traj += xyt[::-1] if integration_direction in ['both', 'forward']: dmap.reset_start_point(x0, y0) s, xyt = _integrate_rk12(x0, y0, dmap, forward_time, maxlength, broken_streamlines) stotal += s xy_traj += xyt[1:] if stotal > minlength: return np.broadcast_arrays(xy_traj, np.empty((1, 2)))[0] else: # reject short trajectories dmap.undo_trajectory() return None return integrate class OutOfBounds(IndexError): pass def _integrate_rk12(x0, y0, dmap, f, maxlength, broken_streamlines=True): """ 2nd-order Runge-Kutta algorithm with adaptive step size. This method is also referred to as the improved Euler's method, or Heun's method. This method is favored over higher-order methods because: 1. To get decent looking trajectories and to sample every mask cell on the trajectory we need a small timestep, so a lower order solver doesn't hurt us unless the data is *very* high resolution. In fact, for cases where the user inputs data smaller or of similar grid size to the mask grid, the higher order corrections are negligible because of the very fast linear interpolation used in `interpgrid`. 2. For high resolution input data (i.e. beyond the mask resolution), we must reduce the timestep. Therefore, an adaptive timestep is more suited to the problem as this would be very hard to judge automatically otherwise. This integrator is about 1.5 - 2x as fast as RK4 and RK45 solvers (using similar Python implementations) in most setups. """ # This error is below that needed to match the RK4 integrator. It # is set for visual reasons -- too low and corners start # appearing ugly and jagged. Can be tuned. maxerror = 0.003 # This limit is important (for all integrators) to avoid the # trajectory skipping some mask cells. We could relax this # condition if we use the code which is commented out below to # increment the location gradually. However, due to the efficient # nature of the interpolation, this doesn't boost speed by much # for quite a bit of complexity. maxds = min(1. / dmap.mask.nx, 1. / dmap.mask.ny, 0.1) ds = maxds stotal = 0 xi = x0 yi = y0 xyf_traj = [] while True: try: if dmap.grid.within_grid(xi, yi): xyf_traj.append((xi, yi)) else: raise OutOfBounds # Compute the two intermediate gradients. # f should raise OutOfBounds if the locations given are # outside the grid. k1x, k1y = f(xi, yi) k2x, k2y = f(xi + ds * k1x, yi + ds * k1y) except OutOfBounds: # Out of the domain during this step. # Take an Euler step to the boundary to improve neatness # unless the trajectory is currently empty. if xyf_traj: ds, xyf_traj = _euler_step(xyf_traj, dmap, f) stotal += ds break except TerminateTrajectory: break dx1 = ds * k1x dy1 = ds * k1y dx2 = ds * 0.5 * (k1x + k2x) dy2 = ds * 0.5 * (k1y + k2y) ny, nx = dmap.grid.shape # Error is normalized to the axes coordinates error = np.hypot((dx2 - dx1) / (nx - 1), (dy2 - dy1) / (ny - 1)) # Only save step if within error tolerance if error < maxerror: xi += dx2 yi += dy2 try: dmap.update_trajectory(xi, yi, broken_streamlines) except InvalidIndexError: break if stotal + ds > maxlength: break stotal += ds # recalculate stepsize based on step error if error == 0: ds = maxds else: ds = min(maxds, 0.85 * ds * (maxerror / error) ** 0.5) return stotal, xyf_traj def _euler_step(xyf_traj, dmap, f): """Simple Euler integration step that extends streamline to boundary.""" ny, nx = dmap.grid.shape xi, yi = xyf_traj[-1] cx, cy = f(xi, yi) if cx == 0: dsx = np.inf elif cx < 0: dsx = xi / -cx else: dsx = (nx - 1 - xi) / cx if cy == 0: dsy = np.inf elif cy < 0: dsy = yi / -cy else: dsy = (ny - 1 - yi) / cy ds = min(dsx, dsy) xyf_traj.append((xi + cx * ds, yi + cy * ds)) return ds, xyf_traj # Utility functions # ======================== def interpgrid(a, xi, yi): """Fast 2D, linear interpolation on an integer grid""" Ny, Nx = np.shape(a) if isinstance(xi, np.ndarray): x = xi.astype(int) y = yi.astype(int) # Check that xn, yn don't exceed max index xn = np.clip(x + 1, 0, Nx - 1) yn = np.clip(y + 1, 0, Ny - 1) else: x = int(xi) y = int(yi) # conditional is faster than clipping for integers if x == (Nx - 1): xn = x else: xn = x + 1 if y == (Ny - 1): yn = y else: yn = y + 1 a00 = a[y, x] a01 = a[y, xn] a10 = a[yn, x] a11 = a[yn, xn] xt = xi - x yt = yi - y a0 = a00 * (1 - xt) + a01 * xt a1 = a10 * (1 - xt) + a11 * xt ai = a0 * (1 - yt) + a1 * yt if not isinstance(xi, np.ndarray): if np.ma.is_masked(ai): raise TerminateTrajectory return ai def _gen_starting_points(shape): """ Yield starting points for streamlines. Trying points on the boundary first gives higher quality streamlines. This algorithm starts with a point on the mask corner and spirals inward. This algorithm is inefficient, but fast compared to rest of streamplot. """ ny, nx = shape xfirst = 0 yfirst = 1 xlast = nx - 1 ylast = ny - 1 x, y = 0, 0 direction = 'right' for i in range(nx * ny): yield x, y if direction == 'right': x += 1 if x >= xlast: xlast -= 1 direction = 'up' elif direction == 'up': y += 1 if y >= ylast: ylast -= 1 direction = 'left' elif direction == 'left': x -= 1 if x <= xfirst: xfirst += 1 direction = 'down' elif direction == 'down': y -= 1 if y <= yfirst: yfirst += 1 direction = 'right'