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- #!/usr/bin/env python3
- # -*- coding: utf-8 -*-
- import timeit
- import numpy
- ###############################################################################
- # Global variables #
- ###############################################################################
- # Small arrays
- xs = numpy.random.uniform(-1, 1, 6).reshape(2, 3)
- ys = numpy.random.uniform(-1, 1, 6).reshape(2, 3)
- zs = xs + 1j * ys
- m1 = [[True, False, False], [False, False, True]]
- m2 = [[True, False, True], [False, False, True]]
- nmxs = numpy.ma.array(xs, mask=m1)
- nmys = numpy.ma.array(ys, mask=m2)
- nmzs = numpy.ma.array(zs, mask=m1)
- # Big arrays
- xl = numpy.random.uniform(-1, 1, 100*100).reshape(100, 100)
- yl = numpy.random.uniform(-1, 1, 100*100).reshape(100, 100)
- zl = xl + 1j * yl
- maskx = xl > 0.8
- masky = yl < -0.8
- nmxl = numpy.ma.array(xl, mask=maskx)
- nmyl = numpy.ma.array(yl, mask=masky)
- nmzl = numpy.ma.array(zl, mask=maskx)
- ###############################################################################
- # Functions #
- ###############################################################################
- def timer(s, v='', nloop=500, nrep=3):
- units = ["s", "ms", "µs", "ns"]
- scaling = [1, 1e3, 1e6, 1e9]
- print("%s : %-50s : " % (v, s), end=' ')
- varnames = ["%ss,nm%ss,%sl,nm%sl" % tuple(x*4) for x in 'xyz']
- setup = 'from __main__ import numpy, ma, %s' % ','.join(varnames)
- Timer = timeit.Timer(stmt=s, setup=setup)
- best = min(Timer.repeat(nrep, nloop)) / nloop
- if best > 0.0:
- order = min(-int(numpy.floor(numpy.log10(best)) // 3), 3)
- else:
- order = 3
- print("%d loops, best of %d: %.*g %s per loop" % (nloop, nrep,
- 3,
- best * scaling[order],
- units[order]))
- def compare_functions_1v(func, nloop=500,
- xs=xs, nmxs=nmxs, xl=xl, nmxl=nmxl):
- funcname = func.__name__
- print("-"*50)
- print(f'{funcname} on small arrays')
- module, data = "numpy.ma", "nmxs"
- timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
- print("%s on large arrays" % funcname)
- module, data = "numpy.ma", "nmxl"
- timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
- return
- def compare_methods(methodname, args, vars='x', nloop=500, test=True,
- xs=xs, nmxs=nmxs, xl=xl, nmxl=nmxl):
- print("-"*50)
- print(f'{methodname} on small arrays')
- data, ver = f'nm{vars}l', 'numpy.ma'
- timer("%(data)s.%(methodname)s(%(args)s)" % locals(), v=ver, nloop=nloop)
- print("%s on large arrays" % methodname)
- data, ver = "nm%sl" % vars, 'numpy.ma'
- timer("%(data)s.%(methodname)s(%(args)s)" % locals(), v=ver, nloop=nloop)
- return
- def compare_functions_2v(func, nloop=500, test=True,
- xs=xs, nmxs=nmxs,
- ys=ys, nmys=nmys,
- xl=xl, nmxl=nmxl,
- yl=yl, nmyl=nmyl):
- funcname = func.__name__
- print("-"*50)
- print(f'{funcname} on small arrays')
- module, data = "numpy.ma", "nmxs,nmys"
- timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
- print(f'{funcname} on large arrays')
- module, data = "numpy.ma", "nmxl,nmyl"
- timer("%(module)s.%(funcname)s(%(data)s)" % locals(), v="%11s" % module, nloop=nloop)
- return
- if __name__ == '__main__':
- compare_functions_1v(numpy.sin)
- compare_functions_1v(numpy.log)
- compare_functions_1v(numpy.sqrt)
- compare_functions_2v(numpy.multiply)
- compare_functions_2v(numpy.divide)
- compare_functions_2v(numpy.power)
- compare_methods('ravel', '', nloop=1000)
- compare_methods('conjugate', '', 'z', nloop=1000)
- compare_methods('transpose', '', nloop=1000)
- compare_methods('compressed', '', nloop=1000)
- compare_methods('__getitem__', '0', nloop=1000)
- compare_methods('__getitem__', '(0,0)', nloop=1000)
- compare_methods('__getitem__', '[0,-1]', nloop=1000)
- compare_methods('__setitem__', '0, 17', nloop=1000, test=False)
- compare_methods('__setitem__', '(0,0), 17', nloop=1000, test=False)
- print("-"*50)
- print("__setitem__ on small arrays")
- timer('nmxs.__setitem__((-1,0),numpy.ma.masked)', 'numpy.ma ', nloop=10000)
- print("-"*50)
- print("__setitem__ on large arrays")
- timer('nmxl.__setitem__((-1,0),numpy.ma.masked)', 'numpy.ma ', nloop=10000)
- print("-"*50)
- print("where on small arrays")
- timer('numpy.ma.where(nmxs>2,nmxs,nmys)', 'numpy.ma ', nloop=1000)
- print("-"*50)
- print("where on large arrays")
- timer('numpy.ma.where(nmxl>2,nmxl,nmyl)', 'numpy.ma ', nloop=100)
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